In JTAG programming mode, you can add, program, or configure FPGA devices supported by the Quartus II software, configuration devices, MAX 3000 devices, and MAX 7000 devices together in a chain. However, the programming options (except for Program/Configure) apply only to configuration devices, MAX 3000 devices, and MAX 7000 devices. Accordingly, if you choose to configure an FPGA device, the programming options (except for Program/Configure) on the Programmer window are unavailable for the selected device.